Containers Should Run As Non-Root

Manual Steps

On any machine with kubectl access, list non-compliant pods using the audit command and capture the output for reference:

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.nodeName // "") as $node
  | (($m.labels // {}) | to_entries | map("\(.key):\(.value)") | join(",")) as $labels
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | (.spec.securityContext.runAsNonRoot // false) as $podNonRoot
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | ($podNonRoot or (.securityContext.runAsNonRoot // false)) as $ok
  | "kind=Pod ns=\($m.namespace) name=\($m.name) uid=\($m.uid) apiVersion=v1"
    + (if ($m.creationTimestamp // "") == "" then "" else " created=\($m.creationTimestamp)" end)
    + (if $node   == ""   then "" else " node=\($node)" end)
    + (if $labels == ""   then "" else " labels=\($labels)" end)
    + (if $own    == null then "" else " owner=\($own.kind)/\($m.namespace)/\($own.name)/\($own.uid)" end)
    + " container=\(.name) image=\(.image) runAsNonRoot=\($ok)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | length) == 0 then "is_compliant=true" else $rows[] end' \
| grep 'is_compliant=false' || true

For each non-compliant pod that is managed by a higher-level controller (Deployment, StatefulSet, DaemonSet, Job, CronJob), identify its owner and edit that resource to set runAsNonRoot: true at the pod level. Example for a Deployment owner in namespace my-namespace named my-app (replace with actual values from owner= in the audit output):
kubectl -n my-namespace edit deployment my-app
In the opened manifest, under spec.template.spec, add or update:
spec: template: spec: securityContext: runAsNonRoot: true
Save and exit to apply the change.

If you prefer to patch instead of interactive edit, on any machine with kubectl access run a JSON patch for each affected controller. Example for the same Deployment (adjust kind/name/namespace per resource):

kubectl -n my-namespace patch deployment my-app \
  --type merge \
  -p '{
    "spec": {
      "template": {
        "spec": {
          "securityContext": {
            "runAsNonRoot": true
          }
        }
      }
    }
  }'

For non-compliant pods that are not controlled by a higher-level resource (no owner= field in the audit output), retrieve the current pod manifest and recreate it with runAsNonRoot: true set. On any machine with kubectl access:
kubectl -n my-namespace get pod my-pod -o yaml > /tmp/my-pod.yaml
Edit /tmp/my-pod.yaml and under spec add:
spec: securityContext: runAsNonRoot: true
Then delete and recreate the pod (it will not be automatically recreated because it has no controller):
kubectl -n my-namespace delete pod my-pod kubectl -n my-namespace apply -f /tmp/my-pod.yaml

If any container must explicitly override the pod-level setting, ensure each container and initContainer that should be non-root has securityContext.runAsNonRoot: true defined. In the relevant controller or pod manifest, under each container:

spec:
  template:
    spec:
      containers:
        - name: my-container
          image: my-image
          securityContext:
            runAsNonRoot: true

Apply the updated manifest using:

kubectl -n my-namespace apply -f <updated-manifest>.yaml

After changes have rolled out and pods are running with updated specs, verify compliance from any machine with kubectl access by re-running the audit command and confirming no is_compliant=false lines remain:

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.nodeName // "") as $node
  | (($m.labels // {}) | to_entries | map("\(.key):\(.value)") | join(",")) as $labels
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | (.spec.securityContext.runAsNonRoot // false) as $podNonRoot
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | ($podNonRoot or (.securityContext.runAsNonRoot // false)) as $ok
  | "kind=Pod ns=\($m.namespace) name=\($m.name) uid=\($m.uid) apiVersion=v1"
    + (if ($m.creationTimestamp // "") == "" then "" else " created=\($m.creationTimestamp)" end)
    + (if $node   == ""   then "" else " node=\($node)" end)
    + (if $labels == ""   then "" else " labels=\($labels)" end)
    + (if $own    == null then "" else " owner=\($own.kind)/\($m.namespace)/\($own.name)/\($own.uid)" end)
    + " container=\(.name) image=\(.image) runAsNonRoot=\($ok)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | length) == 0 then "is_compliant=true" else $rows[] end' \
| grep 'is_compliant=false' || echo "All checked pods are compliant (runAsNonRoot=true)."

Using kubectl

On any machine with kubectl access:

Identify non-compliant pods (from the audit output you already have) and note their controllers (Deployment/StatefulSet/DaemonSet/Job/CronJob) if present in the owner= field. Always fix the controller, not the live Pod.
Edit the owning controller manifest and add runAsNonRoot: true under securityContext at the pod level (preferred) or per container.

Example: Deployment (pod-level securityContext)

kubectl -n <namespace> get deploy <name> -o yaml > /tmp/deploy-nonroot.yaml

Edit /tmp/deploy-nonroot.yaml and under spec.template.spec add:

spec:
  template:
    spec:
      securityContext:
        runAsNonRoot: true
      containers:
      - name: <container-name>
        image: <image>
        # existing fields...

Apply:

kubectl apply -f /tmp/deploy-nonroot.yaml

Example: Deployment (container-level securityContext if you cannot set pod-level)

spec:
  template:
    spec:
      containers:
      - name: <container-name>
        image: <image>
        securityContext:
          runAsNonRoot: true

Repeat the same pattern for other controller types:

StatefulSet:

kubectl -n <namespace> get statefulset <name> -o yaml > /tmp/sts-nonroot.yaml
# edit as above, then:
kubectl apply -f /tmp/sts-nonroot.yaml

DaemonSet:

kubectl -n <namespace> get daemonset <name> -o yaml > /tmp/ds-nonroot.yaml
# edit as above, then:
kubectl apply -f /tmp/ds-nonroot.yaml

Job:

kubectl -n <namespace> get job <name> -o yaml > /tmp/job-nonroot.yaml
# edit under spec.template.spec, then:
kubectl apply -f /tmp/job-nonroot.yaml

CronJob:

kubectl -n <namespace> get cronjob <name> -o yaml > /tmp/cronjob-nonroot.yaml
# edit under spec.jobTemplate.spec.template.spec, then:
kubectl apply -f /tmp/cronjob-nonroot.yaml

For standalone Pods (no owner= in audit output), recreate them with a manifest that includes runAsNonRoot: true:

kubectl -n <namespace> get pod <pod-name> -o yaml > /tmp/pod-nonroot.yaml

Edit /tmp/pod-nonroot.yaml to add:

spec:
  securityContext:
    runAsNonRoot: true

or per container:

spec:
  containers:
  - name: <container-name>
    image: <image>
    securityContext:
      runAsNonRoot: true

Delete fields that must not be reused (status, metadata.uid, metadata.resourceVersion, metadata.creationTimestamp, metadata.managedFields), then:

kubectl delete pod -n <namespace> <pod-name>
kubectl apply -f /tmp/pod-nonroot.yaml

Verification (on any machine with kubectl):

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.securityContext.runAsNonRoot // false) as $podNonRoot
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | ($podNonRoot or (.securityContext.runAsNonRoot // false)) as $ok
  | select($ok | not)
  ] | if (length)==0 then "is_compliant=true" else . end'

Automation

#!/usr/bin/env bash
#
# Enforce runAsNonRoot=true on all non-system Pods in an AKS cluster
# Scope: any machine with kubectl access
#
# Behavior:
# - Skips kube-system, kube-public, kube-node-lease
# - Patches only Pods/containers that lack runAsNonRoot=true
# - Adds pod.spec.securityContext.runAsNonRoot=true when possible
# - If Pod already has a pod-level runAsUser or runAsGroup, you must
#   review manually – this script will not change user IDs.
# - Safe to re-run (idempotent): patches only where needed.

set -euo pipefail

# Ensure dependencies
command -v kubectl >/dev/null 2>&1 || {
  echo "kubectl not found in PATH" >&2
  exit 1
}
command -v jq >/dev/null 2>&1 || {
  echo "jq not found in PATH" >&2
  exit 1
}

echo "Discovering non-compliant Pods (this may take a moment)..."

NON_COMPLIANT_JSON=$(
  kubectl get pods --all-namespaces -o json | jq -c '
    .items[]
    | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
    as $pod
    | ($pod.spec.securityContext.runAsNonRoot // false) as $podNonRoot
    | (($pod.spec.containers // []) + ($pod.spec.initContainers // [])) as $allContainers
    | if ($allContainers | length) == 0 then empty else
        # Container-level compliance check
        ($allContainers
          | map(($podNonRoot or (.securityContext.runAsNonRoot // false)))
          | all) as $all_ok
        | if $all_ok and $podNonRoot then
            empty   # fully compliant
          else
            $pod    # needs attention
          end
      end
  '
)

if [[ -z "${NON_COMPLIANT_JSON}" ]]; then
  echo "All relevant Pods are already compliant (runAsNonRoot=true)."
  exit 0
fi

echo "Patching Pods to set spec.securityContext.runAsNonRoot=true where missing..."

# Helper: patch a single Pod to set pod-level runAsNonRoot=true
patch_pod_run_as_non_root() {
  local ns="$1"
  local name="$2"

  # Get current pod.spec.securityContext (may be null)
  local current_sc
  current_sc="$(kubectl -n "${ns}" get pod "${name}" -o json | jq -c '.spec.securityContext')"

  if [[ "${current_sc}" == "null" ]]; then
    # No pod-level securityContext; create one with runAsNonRoot=true
    kubectl -n "${ns}" patch pod "${name}" \
      --type merge \
      -p '{"spec":{"securityContext":{"runAsNonRoot":true}}}' >/dev/null
  else
    # Merge in runAsNonRoot=true preserving other fields
    # jq is used client-side to prepare a merge patch
    local patched
    patched="$(jq -c '. + {"runAsNonRoot":true}' <<< "${current_sc}")"
    # Apply as a merge patch to spec.securityContext
    kubectl -n "${ns}" patch pod "${name}" \
      --type merge \
      -p "{\"spec\":{\"securityContext\":${patched}}}" >/dev/null
  fi
}

# Iterate over non-compliant Pods and patch them
while IFS= read -r pod_json; do
  ns=$(jq -r '.metadata.namespace' <<< "${pod_json}")
  name=$(jq -r '.metadata.name' <<< "${pod_json}")

  echo "Processing Pod ${ns}/${name}..."

  # Inspect existing pod-level securityContext for manual review needs
  pod_sc="$(jq -c '.spec.securityContext // {}' <<< "${pod_json}")"
  has_run_as_user="$(jq -r 'has("runAsUser")' <<< "${pod_sc}")"
  has_run_as_group="$(jq -r 'has("runAsGroup")' <<< "${pod_sc}")"

  if [[ "${has_run_as_user}" == "true" || "${has_run_as_group}" == "true" ]]; then
    echo "  WARNING: Pod ${ns}/${name} has pod-level runAsUser/runAsGroup."
    echo "           Review this Pod manually to ensure the user is non-root."
    echo "           Skipping automatic patch for this Pod."
    continue
  fi

  patch_pod_run_as_non_root "${ns}" "${name}"
  echo "  Patched: set spec.securityContext.runAsNonRoot=true"

done <<< "${NON_COMPLIANT_JSON}"

echo
echo "Re-running compliance audit to verify..."

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.securityContext.runAsNonRoot // false) as $podNonRoot
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | ($podNonRoot or (.securityContext.runAsNonRoot // false)) as $ok
  | "ns=\($m.namespace) name=\($m.name) container=\(.name) runAsNonRoot=\($ok)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | all(contains("is_compliant=true"))) then
      "is_compliant=true"
    else
      $rows[]
    end
'

echo "Automation run completed."

Azure Introduction

Azure Pricing

Azure Threats

Azure Misconfigurations

Containers Should Run As Non-Root

More Info:

Risk Level

Address

Compliance Standards

Triage and Remediation

Remediation

​More Info:

​Risk Level

​Address

​Compliance Standards

​Triage and Remediation

​Remediation