Containers Should Use A Read-Only Root Filesystem

Manual Steps

Identify non-compliant Pods and their controllers (run on any machine with kubectl access):

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | (.securityContext.readOnlyRootFilesystem == true) as $ok
  | select($ok | not)
  | "ns=\($m.namespace) pod=\($m.name) container=\(.name) image=\(.image)"
    + (if $own == null then "" else " ownerKind=\($own.kind) ownerName=\($own.name)" end)
  ][]'

For each affected controller (Deployment, StatefulSet, DaemonSet, Job, CronJob, etc.), edit the manifest to set readOnlyRootFilesystem: true (run on any machine with kubectl access). Example for a Deployment:
kubectl -n NAMESPACE edit deployment DEPLOYMENT_NAME
In each affected container (and initContainer if present) under spec.template.spec.containers[] (or initContainers[]), ensure:
securityContext: readOnlyRootFilesystem: true
If securityContext already exists, add only the readOnlyRootFilesystem: true line.
If a container needs a writable path, add an emptyDir and mount it (same kubectl edit session as step 2):
- Under spec.template.spec.volumes:
  - name: writable-tmp emptyDir: {}
- Under the appropriate container:
  volumeMounts: - name: writable-tmp mountPath: /path/that/must/be/writable
Adjust name and mountPath as needed for each workload.
For standalone Pods that are not managed by a higher-level controller, export, edit, and re-apply (run on any machine with kubectl access):
kubectl -n NAMESPACE get pod POD_NAME -o yaml > /tmp/pod-POD_NAME.yaml
Edit /tmp/pod-POD_NAME.yaml:
- Remove metadata.uid, metadata.resourceVersion, metadata.creationTimestamp, metadata.ownerReferences, status and other server-populated fields.
- Under spec.containers[] and spec.initContainers[] set:
  securityContext: readOnlyRootFilesystem: true
  and, if needed, add emptyDir + volumeMounts as in step 3. Apply:
kubectl -n NAMESPACE delete pod POD_NAME kubectl -n NAMESPACE apply -f /tmp/pod-POD_NAME.yaml
Wait for updated workloads to roll out and confirm Pods are running (run on any machine with kubectl access):
kubectl -n NAMESPACE get pods -w

Verification (run on any machine with kubectl access):

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.nodeName // "") as $node
  | (($m.labels // {}) | to_entries | map("\(.key):\(.value)") | join(",")) as $labels
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | (.securityContext.readOnlyRootFilesystem == true) as $ok
  | "kind=Pod ns=\($m.namespace) name=\($m.name) uid=\($m.uid) apiVersion=v1"
    + (if ($m.creationTimestamp // "") == "" then "" else " created=\($m.creationTimestamp)" end)
    + (if $node   == ""   then "" else " node=\($node)" end)
    + (if $labels == ""   then "" else " labels=\($labels)" end)
    + (if $own    == null then "" else " owner=\($own.kind)/\($m.namespace)/\($own.name)/\($own.uid)" end)
    + " container=\(.name) image=\(.image)"
    + " readOnlyRootFilesystem=\(if .securityContext.readOnlyRootFilesystem == null then "unset" else .securityContext.readOnlyRootFilesystem end)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | length) == 0 then "is_compliant=true" else $rows[] end'

Confirm the output is is_compliant=true or that all listed containers show is_compliant=true.

Using kubectl

On any machine with kubectl access:

Identify non‑compliant Pods (and their controllers)

kubectl get pods --all-namespaces -o wide

Use the audit output you already have to see the owner= field (e.g. Deployment/StatefulSet/Job). You must edit the owning controller, not the live Pod.

Patch a controller to set readOnlyRootFilesystem: true

Example: patch a Deployment in namespace my-app named web so all containers use a read‑only root filesystem:

kubectl -n my-app patch deployment web \
  --type='json' \
  -p='[
    {
      "op": "add",
      "path": "/spec/template/spec/containers/0/securityContext",
      "value": {
        "readOnlyRootFilesystem": true
      }
    }
  ]'

If securityContext already exists, use:

kubectl -n my-app patch deployment web \
  --type='json' \
  -p='[
    {
      "op": "add",
      "path": "/spec/template/spec/containers/0/securityContext/readOnlyRootFilesystem",
      "value": true
    }
  ]'

Repeat for each non‑compliant controller (Deployment, StatefulSet, DaemonSet, Job, CronJob), adjusting the resource type, name, namespace, and container index as needed.

Provide writable paths via emptyDir (when needed)

If an application needs to write to specific paths, mount emptyDir volumes there instead of leaving the root filesystem writable. Example manifest snippet:

apiVersion: apps/v1
kind: Deployment
metadata:
  name: web
  namespace: my-app
spec:
  replicas: 1
  selector:
    matchLabels:
      app: web
  template:
    metadata:
      labels:
        app: web
    spec:
      volumes:
        - name: tmp
          emptyDir: {}
      containers:
        - name: web
          image: gcr.io/my-project/web:1.0.0
          securityContext:
            readOnlyRootFilesystem: true
          volumeMounts:
            - name: tmp
              mountPath: /tmp

Apply the manifest:

kubectl apply -f /absolute/path/to/web-deployment.yaml

Verification

After controllers have rolled out new Pods, re‑run the audit command from any machine with kubectl:

kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.nodeName // "") as $node
  | (($m.labels // {}) | to_entries | map("\(.key):\(.value)") | join(",")) as $labels
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | (.securityContext.readOnlyRootFilesystem == true) as $ok
  | "kind=Pod ns=\($m.namespace) name=\($m.name) uid=\($m.uid) apiVersion=v1"
    + (if ($m.creationTimestamp // "") == "" then "" else " created=\($m.creationTimestamp)" end)
    + (if $node   == ""   then "" else " node=\($node)" end)
    + (if $labels == ""   then "" else " labels=\($labels)" end)
    + (if $own    == null then "" else " owner=\($own.kind)/\($m.namespace)/\($own.name)/\($own.uid)" end)
    + " container=\(.name) image=\(.image)"
    + " readOnlyRootFilesystem=\(if .securityContext.readOnlyRootFilesystem == null then "unset" else .securityContext.readOnlyRootFilesystem end)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | length) == 0 then "is_compliant=true" else $rows[] end'

Automation

#!/usr/bin/env bash
#
# Enforce readOnlyRootFilesystem=true on Pods' owning controllers in a GKE cluster.
# Applies to all namespaces except kube-system, kube-public, kube-node-lease.
#
# REQUIREMENTS (run on any machine with kubectl access):
#   - kubectl
#   - jq
#
# LIMITATIONS:
#   - Only edits controllers (Deployment, StatefulSet, DaemonSet, ReplicaSet, Job, CronJob).
#   - Skips naked Pods and controllers you lack RBAC to patch.
#   - For containers that must write, you must manually add an emptyDir and mount it.

set -euo pipefail

echo "[INFO] Discovering non-compliant containers..."
NON_COMPLIANT_JSON="$(kubectl get pods --all-namespaces -o json | jq -c '
  .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | (.metadata.ownerReferences // []) as $owns
  | [ $owns[] | select(.controller == true) ] as $ctrls
  | if ($ctrls | length) == 0 then empty else
      . as $pod
      | $ctrls[0] as $own
      | ((.spec.containers // []) + (.spec.initContainers // []))[]
      | select(.securityContext.readOnlyRootFilesystem != true)
      | {
          podNamespace: $pod.metadata.namespace,
          podName: $pod.metadata.name,
          ownerKind: $own.kind,
          ownerName: $own.name,
          ownerUid: $own.uid,
          containerName: .name
        }
    end
')"

if [[ -z "${NON_COMPLIANT_JSON}" ]]; then
  echo "[INFO] All checked containers already have readOnlyRootFilesystem=true (excluding system namespaces)."
  exit 0
fi

# Build a unique list of controllers to patch
echo "[INFO] Building list of owning controllers to patch..."
CONTROLLERS_JSON="$(printf '%s\n' "${NON_COMPLIANT_JSON}" | jq -cs '
  . as $items
  | reduce $items[] as $i ({}; .[
      ($i.podNamespace + "|" + $i.ownerKind + "|" + $i.ownerName)
    ] = 1)
  | keys[]
  | split("|")
  | { namespace: .[0], kind: .[1], name: .[2] }
')"

if [[ -z "${CONTROLLERS_JSON}" ]]; then
  echo "[INFO] No controllers found to patch (only naked Pods are affected)."
  echo "[INFO] Review and recreate affected Pods with readOnlyRootFilesystem=true in their Pod specs."
  exit 0
fi

echo "[INFO] Controllers to patch:"
printf '%s\n' "${CONTROLLERS_JSON}" | jq -r '.namespace + " " + .kind + " " + .name'

patch_controller() {
  local ns="$1"
  local kind="$2"
  local name="$3"

  echo "[INFO] Patching ${kind}/${ns}/${name} to set readOnlyRootFilesystem=true..."

  # Determine the path to pod template containers depending on kind/apiVersion
  # Strategy: fetch as JSON, transform with jq, then apply via kubectl apply -f -
  local tmpfile
  tmpfile="$(mktemp)"

  if ! kubectl -n "${ns}" get "${kind}" "${name}" -o json > "${tmpfile}"; then
    echo "[WARN] Failed to fetch ${kind}/${ns}/${name}; skipping."
    rm -f "${tmpfile}"
    return
  fi

  # Detect spec path
  local jq_filter
  case "${kind}" in
    Deployment|ReplicaSet|StatefulSet|DaemonSet)
      jq_filter='
        .spec.template.spec as $spec
        | .spec.template.spec.containers |=
            (map(.securityContext.readOnlyRootFilesystem = true))
        | if ($spec.initContainers // null) != null then
            .spec.template.spec.initContainers |=
              (map(.securityContext.readOnlyRootFilesystem = true))
          else .
          end
      '
      ;;
    Job)
      jq_filter='
        .spec.template.spec as $spec
        | .spec.template.spec.containers |=
            (map(.securityContext.readOnlyRootFilesystem = true))
        | if ($spec.initContainers // null) != null then
            .spec.template.spec.initContainers |=
              (map(.securityContext.readOnlyRootFilesystem = true))
          else .
          end
      '
      ;;
    CronJob)
      jq_filter='
        .spec.jobTemplate.spec.template.spec as $spec
        | .spec.jobTemplate.spec.template.spec.containers |=
            (map(.securityContext.readOnlyRootFilesystem = true))
        | if ($spec.initContainers // null) != null then
            .spec.jobTemplate.spec.template.spec.initContainers |=
              (map(.securityContext.readOnlyRootFilesystem = true))
          else .
          end
      '
      ;;
    *)
      echo "[WARN] Kind ${kind} not handled by this script; skipping ${kind}/${ns}/${name}."
      rm -f "${tmpfile}"
      return
      ;;
  esac

  local patched
  if ! patched="$(jq "${jq_filter}" "${tmpfile}")"; then
    echo "[WARN] Failed to transform ${kind}/${ns}/${name}; skipping."
    rm -f "${tmpfile}"
    return
  fi

  # Idempotent: applying the same spec again is safe
  if ! printf '%s\n' "${patched}" | kubectl apply -f - >/dev/null; then
    echo "[WARN] Failed to apply patch for ${kind}/${ns}/${name}; skipping."
    rm -f "${tmpfile}"
    return
  fi

  rm -f "${tmpfile}"
  echo "[INFO] Patched ${kind}/${ns}/${name}."
}

# Patch each controller
printf '%s\n' "${CONTROLLERS_JSON}" | jq -c '.' | while read -r ctrl; do
  ns="$(printf '%s\n' "${ctrl}" | jq -r '.namespace')"
  kind="$(printf '%s\n' "${ctrl}" | jq -r '.kind')"
  name="$(printf '%s\n' "${ctrl}" | jq -r '.name')"
  patch_controller "${ns}" "${kind}" "${name}"
done

echo "[INFO] Waiting for pods to be recreated with updated specs..."
sleep 10

echo "[INFO] Re-running compliance check..."
kubectl get pods --all-namespaces -o json | jq -r '
  [ .items[]
  | select(.metadata.namespace as $n | ["kube-system","kube-public","kube-node-lease"] | index($n) | not)
  | .metadata as $m
  | (.spec.nodeName // "") as $node
  | (($m.labels // {}) | to_entries | map("\(.key):\(.value)") | join(",")) as $labels
  | ([ ($m.ownerReferences // [])[] | select(.controller) ] | first) as $own
  | ((.spec.containers // []) + (.spec.initContainers // []))[]
  | (.securityContext.readOnlyRootFilesystem == true) as $ok
  | "kind=Pod ns=\($m.namespace) name=\($m.name) uid=\($m.uid) apiVersion=v1"
    + (if ($m.creationTimestamp // "") == "" then "" else " created=\($m.creationTimestamp)" end)
    + (if $node   == ""   then "" else " node=\($node)" end)
    + (if $labels == ""   then "" else " labels=\($labels)" end)
    + (if $own    == null then "" else " owner=\($own.kind)/\($m.namespace)/\($own.name)/\($own.uid)" end)
    + " container=\(.name) image=\(.image)"
    + " readOnlyRootFilesystem=\(if .securityContext.readOnlyRootFilesystem == null then "unset" else .securityContext.readOnlyRootFilesystem end)"
    + " is_compliant=\(if $ok then "true" else "false" end)"
  ] as $rows
  | if ($rows | map(select(. | test("is_compliant=false$"))) | length) == 0
    then "is_compliant=true"
    else $rows[]
    end
'

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Containers Should Use A Read-Only Root Filesystem

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